- A1 Pain Imaging Lab
- Auditory Cognition Lab
- Brain Aging and Dementia (BAnD) Lab
- Brain & Spinal Cord Laboratory
- Brainstem Imaging Lab
- The Caravan Lab
- Center for Integrative Pain NeuroImaging (CIPNI)
- Cerebrovascular Aging and Spin Labeling Lab (CASL)
- Chemical Neuroscience Program
- Clinical Computational Neuroimaging Group
- The David Cohen MEG Lab
- Farrar Research Group
- Integrated MR-PET Imaging Laboratory
- Laboratory for Computational Neuroimaging
- Low-field MRI and Hyperpolarized Media Lab
- Magnetic Resonance – Physics & Instrumentation Group
- Meditation Research Program
- Napadow Lab
- Optical Molecular Imaging Laboratory
- Optics @ Martinos
- Pain and Neuroinflammation Imaging Lab
- Price Lab
- The Quantitative Translational Imaging in Medicine Lab
- Ratai Lab
- Stufflebeam Lab
- SYNAPSE Program
- Takahashi Laboratory
- TMS Lab
- Translational Neuroimaging and Neural Control (TNNC) Lab
- Valera Lab
- Wang Lab
- Wey Lab